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Sequence alignment from the perspective of stochastic optimization: a survey
Sequence alignment stochastic optimization simulated annealing genetic algorithms particle swarm optimization ant colonyoptimization
2011/3/22
DNA and protein are the fundamental biological sequences. DNA is a fundamental molecule that plays a vital role in the processes of life. Proteins synthesized by DNA in a cell are the building blocks ...
Using the PGAS Programming Paradigm for Biological Sequence Alignment on a Chip Multi-Threading Architecture
Partitioned Global Address Space Unified Parallel C Multicore machines Multi-threading Architecture
2010/2/2
The Partitioned Global Address Space (PGAS) programming
paradigm offers ease-of-use in expressing parallelism
through a global shared address space while emphasizing performance
by providing locali...