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南京农业大学农学院《Plant Physiology》发表黄骥教授“RiceTFtarget: A Rice Transcription Factor-Target Prediction Server Based on Co-expression and Machine Learning”（图）
黄骥 基因 生物信息学 作物
2023/10/28
转录因子（TF）在基因表达调控中发挥了重要作用。鉴定转录因子的靶基因或与靶基因启动子结合的转录因子对于解析转录因子-靶基因模块的生物学功能和调控网络至关重要。2023年6月15日，作物生物信息学课题组在Plant Physiology发表了题为“RiceTFtarget: A Rice Transcription Factor-Target Prediction Server Based on C...
A comprehensive and automated machine-learning platform for nucleic acid and protein sequence analysis, prediction and visualization
棉花 纤维品质 QTL 遗传基因组
2024/4/16
本研究在sGK9708×0-153、LMY22×LY343、鲁绵研28×新陆早24等多个重组自交系群体中通过综合考评表型变异和共有置信区间筛选主效QTL，结果表明在A04、A07、A08和D08染色体上存在重要的纤维品质相关QTL。其中，通过SGK9708×0-153群体的转录组数据在纤维长度和强度QTL中分别检测到50和48个候选基因。这些基因的共表达网络模块在多个RIL群体中的基因对之间表现出...
Incorporation of parental phenotypic data into multi-omic models improves prediction of yield-related traits in hybrid rice
parental phenotypic data multi-omic models yield-related traits hybrid rice
2023/7/20
Hybrid breeding has been shown to effectively increase rice productivity. However, identifying desirable hybrids out of numerous potential combinations is a daunting challenge. Genomic selection holds...
Prediction of Silking Stage in Corn Based on Temperature Response Evaluated by Nonparametric Method
Corn Growth Nonparametric method Prediction Silking stage Temperature response
2009/8/6
Silking stages of three corn varieties (Wasehomare, Hokuyu and P3715) were estimated according to the concept of DVI (Horie et all), using the Nonparametric method recently proposed (Takezawa and Tamu...
Modelling and Prediction of Developmental Process in Rice:II. A model for simulating panicle development based on daily photoperiod and temperature
Development Developmental index Developmental rate Heading date Model Panicle development
2009/7/28
Under the hypothesis that environmental responses of ontogenetic development of rice are different before and after panicle initiation (PI), a model for simulating rice panicle development and heading...
Habitat Niche-Fitness and Radix Yield Prediction Models for Angelica sinensis Cultivated in the Alpine Area of the Southeastern Region of Gansu Province,China
Angelica sinensis Habitat niche-fitness (HNF) Radix yield
2009/7/21
Dried root of Angelica sinensis has been used for thousands of years in traditional Chinese medicinal prescriptions. Researches on better knowledge of appropriate habitats for cultivation of this spec...
Prediction of Silking Date of Corn from the Multiple Regression Formula with Day Length and Average Temperature as Variables
Corn Day length Multiple regression formula Prediction Silking stage
2009/7/10
The silking date of corn was predicted from the multiple regression formula (MRF) with day length and the average temperature within one month after sowing as variables. The cultivars used were G4321...
Comparison of the Constancy of Heat Unit Accumulation Needed for Heading of Sorghum and Prediction of Heading Date by the Multiple Regression Formula in Northern Kyushu District
Multiple regression formula Heading date Sorghum Effective heat unit accumulation
2009/7/9
The constancy of the heat unit accumulation needed for the heading of sorghum cultivar P956 was examined for the simple heat unit accumulation method, the effective heat unit accumulation Method I in ...
Method for the Prediction of the Rate of +b Color Change in Upland Cotton（Gossypium hirsutum L）as a Function of Storage Temperatures
+b Color Change Upland Cotton Storage Temperatures
2009/4/30
Previous studies have indicated that HVI +b values of baled Upland cotton increase due to prolonged storage with uncontrolled temperature conditions. This change in +b is accompanied by decreases in r...
Prediction of Hybrid Vigour for Yield Attributes among Synchronized Hybrids in Rice (Oryza sativa L.)
Cytoplasmic male sterility relative heterosis heterobeltiosis standard heterosis Rice
2010/11/8
Five cytoplasmic male sterile lines and ten testers of diverse origin were crossed in Line. Tester fashion to obtain 50 hybrid combinations. The performance of the hybrids was estimated based on relat...