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Selecting fast folding proteins by their rate of convergence
fast folding proteins their rate of convergence Biological Physics
2012/5/3
We propose a general method for predicting potentially good folders from a given number of amino acid sequences. Our approach is based on the calculation of the rate of convergence of each amino acid ...
Selecting fast folding proteins by their rate of convergence
Selecting fast folding proteins their rate of convergence Biological Physics
2012/4/19
We propose a general method for predicting potentially good folders from a given number of amino acid sequences. Our approach is based on the calculation of the rate of convergence of each amino acid ...
Intrinsic Mean Square Displacements in Proteins
Intrinsic Mean Square Displacements Proteins
2012/2/28
The thermal mean square displacement (MSD) of hydrogen in proteins and its associated hydration water is measured by neutron scattering experiments and used an indicator of protein function. The obser...
Computational Studies of the Structural Stability of Rabbit Prion Protein Compared to Human and Mouse Prion Proteins
Neurodegenerative Diseases Prion Diseases Immunity Rabbit Prion Protein Rabbit NMR X-ray and Homology Structures
2011/8/11
Abstract: Prion diseases are invariably fatal and highly infectious neurodegenerative diseases affecting humans and animals. The neurodegenerative diseases such as Creutzfeldt-Jakob disease, variant C...
Change of caged dynamics at Tg in hydrated proteins found after suppressing the methyl-group rotation contribution
hydrated protein, solvated proteins, dynamic transition, neutron scattering, caged dynamics, glass transition
2011/9/29
In conventional glassformers at sufficiently short times and low enough temperatures, molecules are mutually caged by the intermolecular potential. The fluctuation and dissipation from motion of caged...
Natively unfolded proteins: An overview
intrinsic disorder structural domain disorder prediction transcription factor eukaryote
2010/12/2
Proteins with wholly or partly denatured structures in vivo are called intrinsically disordered or natively unfolded proteins (NUPs). Functional importance of NUPs was revealed by NMR studies as first...
Stereoscopic viewing system for proteins using OpenRasmol: a tool for displaying a filament of proteins
Molecular graphics Space filling model Virtual reality system protein assembly F-actin
2010/12/2
We have made a stereoscopic viewing system for a large assembly of proteins using OpenRasmol. The stable version 2.7.1 of OpenRasmol is modified for the system, which uses an eye-ware instead of train...
Ratio of membrane proteins in total proteomes of prokaryota
membrane protein prediction sequence simulation large-scale genome comparison comparative proteomics protein world
2010/12/2
The numbers of membrane proteins in the current genomes of various organisms provide an important clue about how the protein world has evolved from the aspect of membrane proteins. Numbers of membrane...
Prediction of interacting proteins from homology-modeled complex structures using sequence and structure scores
protein-protein interaction homology modeling binding specificity sequence similarity contact energy
2010/12/2
Protein-protein interactions support most biological processes, and it is important to find specifically interacting partner proteins among homologous proteins in order to elucidate cellular functions...
Mechanisms of secondary structure breakers in soluble proteins
secondary structure secondary structure breaker soluble proteins structure prediction amphiphilicity
2010/12/2
Breaking signals of secondary structure put strong limitations on the tertiary structures of proteins. In addition to proline and glycine clusters, which are well-known secondary structure breakers, c...