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De novo phasing resolves haplotype sequences in complex plant genomes
de novo phasing haplotype-resolved assembly autopolyploid chromosomal rearrangement
2023/11/28
Genome phasing is a recently developed assembly method that separates heterozygous eukaryotic genomic regions and builds haplotype-resolved assemblies. Because differences between haplotypes are ignor...
SCR-22 of pollen-dominant S haplotype class is recessive to SCR-44 of pollen-recessive S haplotype class in Brassica rapa
SCR-22 pollen-dominant S haplotype SCR-44 Brassica rapa
2023/8/9
SCR/SP11 encodes the male determinant of recognition specificity of self-incompatibility (SI) in Brassica species and is sporophytically expressed in the anther tapetum. Based on dominance relationshi...
Linkage Disequilibrium and Haplotype Block Structure in Portuguese Holstein Cattle
single nucleotide polymorphism GWAS dairy cattle
2018/3/5
The objectives of this study were to estimate linkage disequilibrium (LD), describe and scan a haplotype block for
the presence of genes that may affect milk production traits in Portuguese Holstein ...
Strategies for haplotype-based association mapping in a complex pedigreed population
complex pedigree false positives
2015/6/23
In association mapping, haplotype-based methods are generally regarded to provide higher
power and increased precision than methods based on single markers. For haplotype-based association
mapping...
Haplotype inference and haplotype-based transmission disequilibrium test (Hap-TDT)
Haplotype inference Transmission Disequilibrium Test Haplotype-based TDT
2016/12/20
Haplotype inference and haplotype-based transmission disequilibrium test (Hap-TDT) .
Characterization of S haplotype in a new self-compatible Brassica rapa cultivar Dahuangyoucai
Brassica rapa L. gene expression M-locus protein kinase (MLPK) S-locus genes self-incompatibility
2014/2/24
The most important Brassica species, B. rapa, is naturally self-incompatible. Self-compatible mutants would be useful for dissecting the molecular mechanism of self-incompatibility (SI), a process tha...
EST-SNPs in bread wheat: discovery, validation, genotyping and haplotype structure
contigs DNA polymorphism DNA sequencing homoeologue sequence variants (HSVs) Triticum aestivum L.
2014/3/11
The present study involves discovery, validation and use of single-nucleotide polymorphisms (SNPs) in bread wheat utilizing 48 EST-contigs (individual contigs having 20-89 ESTs, derived from 2 to 11 d...